Open projects
Here’s a list of my publicly available projects:
Update: Most of these projects did not move significantly forward due to various circumstances. If you’re interested in their outcomes, please come back around February 2009.
Scientific:
- Sequence analysis and evolution of bacteriocins (stalled)
- Antiadhesion compound for trimeric autotransporter adhesins (planned)
- Open framework for synthetic biology (planned)
- Phage-bacteria cooperation (planned)
Software:
- Scientific del.icio.us (planned)
- Java-based visualization tool for protein domains and repeats (stalled)
- Visualization of aminoacids properties in posttranslational modifications (planned)
- Alignment visualization tool (based on Aln2Plot idea) (planned)
Other:
These are not the only things I’m working on, but the only ones that I can make completely public/transparent, because nobody else is involved.
Have you tried python and matplotlib for visualization tasks ?
I don`t know does it fits your needs, but certainly you should try, cause matplotlib gives publication quality visualisations.
Thanks. Actually, as far as my python skills allowed, I did try matplotlib and this will be most probably library of choice for aln2plot-like tool (especially if I can combine it with reportlab for non-graphical elements). Processing is great for visulization of things that are hard to describe in mathematical form.
Is data mining a part of your projects? let me know