http://freelancingscience.com/2008/05/25/surprises-in-biological-databases-nr/ visualization, protein science, open science and freelancing science Fri, 14 May 2010 14:02:38 +0000 hourly 1 http://wordpress.com/ http://freelancingscience.com/2008/05/25/surprises-in-biological-databases-nr/#comment-418 Pawel Szczesny Wed, 28 May 2008 16:06:03 +0000 http://freesci.wordpress.com/?p=114#comment-418 I must admit it happened to me first time. Last time I did some clustering (maybe a year ago) I didn't notice any issues but on the other hand new things appear in the GenBank much faster than before. I must admit it happened to me first time. Last time I did some clustering (maybe a year ago) I didn’t notice any issues but on the other hand new things appear in the GenBank much faster than before.

]]> http://freelancingscience.com/2008/05/25/surprises-in-biological-databases-nr/#comment-417 Kay at Suicyte Sun, 25 May 2008 20:36:37 +0000 http://freesci.wordpress.com/?p=114#comment-417 A lot of programs choke on excessively long FASTA headers. Readseq is one example that comes to mind. I routinely pass FASTA-formatted database sequences through a 'cut' filter before passing them on to sequence analysis programs A lot of programs choke on excessively long FASTA headers. Readseq is one example that comes to mind. I routinely pass FASTA-formatted database sequences through a ‘cut’ filter before passing them on to sequence analysis programs

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